PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G165300.1
Common NameB456_004G165300, LOC105791690
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 255aa    MW: 27974.7 Da    PI: 5.3576
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G165300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.9e-1887135355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         ++GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  Gorai.004G165300.1  87 FRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 135
                         89***998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.95886143IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-2186143IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-3186144IPR001471AP2/ERF domain
SMARTSM003802.4E-3786149IPR001471AP2/ERF domain
CDDcd000189.51E-3287144No hitNo description
PRINTSPR003676.5E-108798IPR001471AP2/ERF domain
PfamPF008473.6E-1287135IPR001471AP2/ERF domain
PRINTSPR003676.5E-10109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEFGRDINIE NDASHCHNNL LSSYSVVSYT ATATSSTCSS SSTSGCHPNG VAEKRLKKGG  60
DIENDDNENK KRQRSTCGNN DSKHGTFRGV RMRSWGKWVS EIREPRKKSR IWLGTYPTAE  120
MAARAHDVAA LAIKGPSAYL NFPEIAKQLP RPATTSPKDI QAAASQAAAS TFLDTRQCNV  180
QTEAGVSHEE LHNTQESSSS PSIDDDDTLF DLPDLMIDTA DRNDGFCSYS SSAWQICAVD  240
AGFRIEEPFS WDYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1587143360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475346.10.0PREDICTED: ethylene-responsive transcription factor ERF034-like
SwissprotQ8LBQ76e-65ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0D2QYV40.0A0A0D2QYV4_G
STRINGPOPTR_0014s05500.11e-79(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60490.11e-46ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]